Those particular puzzles are not related, so it's unlikely that you've caused a problem with your game. It's probable that you've forgotten the correct procedure for successful weather dancing. We get a lot of questions from people who are playing the game again and can't make various puzzles work, because they've forgotten something important. It's very easy to do.

You could always refer to the
Official VV3 Guide to refresh your memory, or just click below for the quick answer.

You must use only adept and/or master farmers in your weather dance to make it rain.